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Sub-county schools in Kenya form the lowest cadre of secondary schools.
They come after national, extra county and county schools respectively.
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Kenyan learners who attain low marks in the KCPE national exam are admitted to these schools.
Majority of sub-county schools are mixed.
Most of them are day schools though a few are day/boarding schools.
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They are available across all the 47 counties.
Here is a list of sub-county secondary schools in Kisii County:
| SCHOOL | KNEC CODE | CATEGORY | |
| 1 | KEBABE S.D.A SECONDARY SCHOOL | 40727119 | Sub County |
| 2 | KIOBEGI SECONDARY SCHOOL | 40732111 | Sub County |
| 3 | NYABITE A.C SECONDARY SCHOOL | 40732112 | Sub County |
| 4 | ST CHARLES KABEO SECONDARY SCHOOL | 40732113 | Sub County |
| 5 | ST. JAMES GIONSARIA SECONDARY SCHOOL | 40732115 | Sub County |
| 6 | ROGONGO DEB MIXED SECONDARY SCHOOL | 40732116 | Sub County |
| 7 | NYABITE DOK SECONDARY SCHOOL | 40732117 | Sub County |
| 8 | MOSORA SDA SECONDARY SCHOOL | 40732118 | Sub County |
| 9 | ST. JOHN’S OROGARE SECONDARY SCHOOL | 40732119 | Sub County |
| 10 | ST. THOMAS TURWA SECONDARY SCHOOL | 40732121 | Sub County |
| 11 | ITUMBE DOK SECONDARY SCHOOL | 40732123 | Sub County |
| 12 | NYACHOGOCHOGO AIC SECONDARY SCHOOL | 40732124 | Sub County |
| 13 | EBIGOGO SECONDARY SCHOOL | 40732125 | Sub County |
| 14 | ST. GABRIEL RIYABO SECONDARY SCHOOL | 40732126 | Sub County |
| 15 | NYABISIA DEB MIXED SECONDARY SCHOOL | 40732130 | Sub County |
| 16 | NAIKURU P.A.G SECONDARY SCHOOL | 40732201 | Sub County |
| 17 | ISENA P.A.G SECONDARY SCHOOL | 40732202 | Sub County |
| 18 | ST PAUL’S NYACHEKI SECONDARY SCHOOL | 40732203 | Sub County |
| 19 | MOCHENGO P.A.G SECONDARY SCHOOL | 40732204 | Sub County |
| 20 | NYANGUSU MIXED SECONDARY SCHOOL | 40732205 | Sub County |
| 21 | BORANGI S.D.A SECONDARY | 40732208 | Sub County |
| 22 | NYAMAKOROBO F.A.M SECONDARY SCHOOL | 40732209 | Sub County |
| 23 | KIONDUSO P.A.G. SECONDARY SCHOOL | 40732210 | Sub County |
| 24 | GETAI SDA MIXED SECONDARY SCHOOL | 40732211 | Sub County |
| 25 | MOGONGA P.A.G SECONDARY SCHOOL | 40732212 | Sub County |
| 26 | THE SACRED HEART OF JESUS EKEONGA SECONDARY SCHOOL Sub County | 40732213 | Sub County |
| 27 | EBIOSI P.A.G MIXED SECONDARY SCHOOL | 40732214 | Sub County |
| 28 | NYAMUYA ELCK SECONDARY SCHOOL | 40732216 | Sub County |
| 29 | MAKAROR MIXED DAY SECONDARY SCHOOL | 46802012 | Sub County |
| 30 | SHALETEY MIXED DAY SECONDARY SCHOOL | 46802013 | Sub County |
| 31 | BARWAQO MIXED DAY SECONDARY SCHOOL | 46802014 | Sub County |
| 32 | FURAHA MIXED DAY SECONDARY SCHOOL | 46802104 | Sub County |
| 33 | WABERI MIXED DAY SECONDARY SCHOOL | 46802106 | Sub County |
| 34 | THE FAULU SECONDARY SCHOOL | 46802108 | Sub County |
| 35 | AHMED LIBAN SECONDARY SCHOOL | 46802109 | Sub County |
| 36 | BUTE MIXED DAY SECONDARY SCHOOL | 46807103 | Sub County |
| 37 | HADADO SECONDARY SCHOOL | 46808103 | Sub County |
| 38 | ADEMASAJIDA MIXED DAY SECONDARY SCHOOL | 46808104 | Sub County |
| 39 | LAGBOGOL SECONDARY SCHOOL | 46808106 | Sub County |
| 40 | LEHELEY SECONDARY SCHOOL | 46809101 | Sub County |
| 41 | DIIF SECONDARY SCHOOL | 46809201 | Sub County |
| 42 | ELDAS GIRLS SECONDARY SCHOOL | 46813102 | Sub County |
| 43 | TULA TULA SECONDARY SCHOOL | 46813103 | Sub County |
| 44 | BUNA GIRLS SECONDARY SCHOOL | 46819102 | Sub County |
| 45 | HABASWEIN MIXED DAY SECONDARY SCHOOL | 46820103 | Sub County |
| 46 | BIYAMATHOW MIXED DAY AND BOARDING SECONDARY SCHOOL Sub County | 46820105 | Sub County |
| 47 | INSHAALLAH HIGH SCHOOL | 46820106 | Sub County |
| 48 | ABAKORE MIXED DAY SECONDARY SCHOOL | 46820107 | Sub County |
| 49 | SABULI MIXED DAY&BOARDING SECONDARY SCHOOL | 46820108 | Sub County |
| 50 | BARWAQO BOYS DAY SECONDARY SCHOOL | 47803107 | Sub County |
| 51 | KHADIJA GIRLS DAY SECONDARY SCHOOL | 47803109 | Sub County |
| 52 | BURUBURU DAY BOYS SECONDARY SCHOOL | 47803110 | Sub County |
| 53 | KAMOR SECONDARY SCHOOL | 47803115 | Sub County |
| 54 | DUSE BOYS SECONDARY SCHOOL | 47803117 | Sub County |
| 55 | ELIMU BORA MIXED SECONDARY SCHOOL | 47803120 | Sub County |
| 56 | MANDERA DIMTU GIRLS SECONDARY SCHOOL | 47803121 | Sub County |
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